Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | RCA23_RS13460 | Not Available | Negative | 2790497 - 2791528 | 38574.2 |
| sensor histidine kinase n-terminal domain-containing protein | RCA23_RS13465 | Not Available | Negative | 2791498 - 2792862 | 49179.4 |
| response regulator transcription factor | RCA23_RS13470 | Not Available | Negative | 2792886 - 2793554 | 24831.8 |
| bug family tripartite tricarboxylate transporter substrate binding protein | RCA23_RS13475 | Not Available | Positive | 2793656 - 2794624 | 33262.4 |
| tripartite tricarboxylate transporter tctb family protein | RCA23_RS13480 | Not Available | Positive | 2794624 - 2795112 | 17519.1 |
| tripartite tricarboxylate transporter permease | RCA23_RS13485 | Not Available | Positive | 2795114 - 2796619 | 51750.1 |
| acyclic terpene utilization atua family protein | RCA23_RS13490 | Not Available | Positive | 2796621 - 2797979 | 48385.9 |
| duf4387 family protein | RCA23_RS13495 | Not Available | Positive | 2797972 - 2798277 | 11149.5 |
| yjbh domain-containing protein | RCA23_RS13505 | Not Available | Negative | 2798784 - 2799140 | 13945.4 |
| hypothetical protein | RCA23_RS13510 | Not Available | Positive | 2799142 - 2799336 | 7175.88 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
