Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 2758803 - 2758879 | Not Available |
| ankyrin repeat domain-containing protein | RCA23_RS13315 | Not Available | Negative | 2759328 - 2760572 | 48190.3 |
| hypothetical protein | RCA23_RS13320 | Not Available | Negative | 2760724 - 2761026 | 11411.7 |
| hypothetical protein | RCA23_RS13325 | Not Available | Positive | 2761304 - 2761564 | 9778.63 |
| duf3237 domain-containing protein | RCA23_RS13330 | Not Available | Negative | 2761697 - 2762191 | 18174.8 |
| marr family winged helix-turn-helix transcriptional regulator | RCA23_RS13335 | Not Available | Positive | 2762238 - 2762687 | 16541.1 |
| feruloyl-coa synthase | RCA23_RS13340 | Not Available | Positive | 2762759 - 2764528 | 63976.5 |
| trap transporter large permease | RCA23_RS13345 | Not Available | Negative | 2764525 - 2765850 | 46645.5 |
| trap transporter small permease | RCA23_RS13350 | Not Available | Negative | 2765854 - 2766366 | 18441.1 |
| trap transporter substrate-binding protein | RCA23_RS13355 | Not Available | Negative | 2766427 - 2767464 | 37060.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
