Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-leu | Not Available | Not Available | Positive | 282145 - 282231 | Not Available |
| hypothetical protein | RCA23_RS16825 | Not Available | Positive | 282482 - 282610 | 4187.17 |
| hypothetical protein | RCA23_RS16360 | Not Available | Negative | 282688 - 282831 | 4998.61 |
| sulfatase-like hydrolase/transferase | RCA23_RS01300 | Not Available | Negative | 282886 - 284544 | 62149.6 |
| nadh:flavin oxidoreductase/nadh oxidase | RCA23_RS01305 | Not Available | Positive | 284793 - 285923 | 40209.9 |
| l-idonate 5-dehydrogenase | RCA23_RS01310 | Not Available | Negative | 285961 - 287001 | 36102.6 |
| sdr family oxidoreductase | RCA23_RS01315 | Not Available | Positive | 287072 - 287839 | 26728.8 |
| nad(p)-dependent oxidoreductase | RCA23_RS01320 | Not Available | Positive | 288037 - 288939 | 30889.3 |
| sugar phosphate isomerase/epimerase family protein | RCA23_RS01325 | Not Available | Positive | 288936 - 289799 | 31795.1 |
| 2-hydroxyacid dehydrogenase | RCA23_RS01330 | Not Available | Negative | 289839 - 290765 | 33227.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
