Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptidase i | RCA23_RS13110 | Not Available | Negative | 2723767 - 2724636 | 31790.1 |
| holo-acp synthase | RCA23_RS13115 | Not Available | Negative | 2724688 - 2725101 | 14903.0 |
| pyridoxine 5'-phosphate synthase | RCA23_RS13120 | Not Available | Negative | 2725098 - 2725841 | 26385.6 |
| duf2062 domain-containing protein | RCA23_RS13125 | Not Available | Negative | 2725865 - 2726515 | 24243.8 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | RCA23_RS13130 | Not Available | Negative | 2726508 - 2728673 | 81217.3 |
| dna-directed rna polymerase subunit omega | RCA23_RS13135 | Not Available | Negative | 2728686 - 2729039 | 13060.3 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | RCA23_RS13140 | Not Available | Negative | 2729135 - 2729707 | 21356.8 |
| nyn domain-containing protein | RCA23_RS13145 | Not Available | Positive | 2729822 - 2730388 | 21479.6 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | RCA23_RS13150 | Not Available | Positive | 2730453 - 2731418 | 34654.6 |
| class i sam-dependent methyltransferase | RCA23_RS13155 | Not Available | Positive | 2731411 - 2731998 | 21060.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
