Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase family protein | RCA23_RS13060 | Not Available | Positive | 2714718 - 2715914 | 44293.9 |
| acyl-coa dehydrogenase family protein | RCA23_RS13065 | Not Available | Positive | 2715918 - 2717012 | 39115.9 |
| helix-turn-helix domain-containing protein | RCA23_RS13070 | Not Available | Positive | 2717231 - 2717998 | 28663.3 |
| acyl-coa dehydrogenase family protein | RCA23_RS13075 | Not Available | Positive | 2718086 - 2719246 | 42321.7 |
| nadph:quinone reductase | RCA23_RS13080 | Not Available | Negative | 2719305 - 2720279 | 34310.4 |
| lyse family translocator | RCA23_RS13085 | Not Available | Positive | 2720400 - 2720990 | 20667.2 |
| dna repair protein reco | RCA23_RS13090 | Not Available | Negative | 2720952 - 2721716 | 27698.5 |
| duf1491 family protein | RCA23_RS13095 | Not Available | Negative | 2721823 - 2722155 | 12290.7 |
| gtpase era | RCA23_RS13100 | Not Available | Negative | 2722152 - 2723060 | 33565.7 |
| ribonuclease iii | RCA23_RS13105 | Not Available | Negative | 2723057 - 2723737 | 24509.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
