Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | RCA23_RS12960 | Not Available | Positive | 2689498 - 2690184 | 25379.9 |
| sensor histidine kinase | RCA23_RS12965 | Not Available | Positive | 2690190 - 2691731 | 57924.9 |
| hypothetical protein | RCA23_RS12970 | Not Available | Negative | 2691744 - 2691980 | 8499.84 |
| hypothetical protein | RCA23_RS12975 | Not Available | Negative | 2692024 - 2692242 | 7190.2 |
| inorganic phosphate transporter | RCA23_RS12980 | Not Available | Negative | 2692536 - 2694029 | 52408.4 |
| hypothetical protein | RCA23_RS16595 | Not Available | Negative | 2694246 - 2694422 | 6509.66 |
| 3-deoxy-8-phosphooctulonate synthase | RCA23_RS12990 | Not Available | Negative | 2694491 - 2695336 | 30029.6 |
| sis domain-containing protein | RCA23_RS12995 | Not Available | Positive | 2695480 - 2696481 | 35203.7 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | RCA23_RS13000 | Not Available | Negative | 2696491 - 2697297 | 30096.9 |
| autotransporter domain-containing protein | RCA23_RS13005 | Not Available | Negative | 2697384 - 2698445 | 37760.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
