Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-ii family nitrogen regulator | RCA23_RS12910 | Not Available | Positive | 2680698 - 2681036 | 11935.4 |
| ammonium transporter | RCA23_RS12915 | Not Available | Positive | 2681036 - 2682373 | 46851.6 |
| homoprotocatechuate degradation operon regulator hpar | RCA23_RS12920 | Not Available | Negative | 2682426 - 2682887 | 17370.3 |
| 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | RCA23_RS12925 | Not Available | Positive | 2683007 - 2684515 | 54443.0 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | RCA23_RS12930 | Not Available | Positive | 2684539 - 2685522 | 37180.9 |
| 3-carboxy-cis,cis-muconate cycloisomerase | RCA23_RS12935 | Not Available | Negative | 2685534 - 2686538 | 35671.4 |
| 3-keto-5-aminohexanoate cleavage protein | RCA23_RS12940 | Not Available | Negative | 2686535 - 2687377 | 30273.1 |
| protocatechuate 3,4-dioxygenase subunit alpha | RCA23_RS12945 | Not Available | Negative | 2687370 - 2687930 | 19922.6 |
| protocatechuate 3,4-dioxygenase subunit beta | RCA23_RS12950 | Not Available | Negative | 2687930 - 2688625 | 25643.5 |
| 4-carboxymuconolactone decarboxylase | RCA23_RS12955 | Not Available | Negative | 2688655 - 2689041 | 14066.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
