Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4864 domain-containing protein | RCA23_RS12760 | Not Available | Negative | 2648331 - 2648732 | 15401.6 |
| lysine--trna ligase | RCA23_RS12765 | Not Available | Negative | 2648796 - 2650370 | 59333.6 |
| tellurite resistance terb family protein | RCA23_RS12770 | Not Available | Positive | 2650510 - 2650884 | 13495.2 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | RCA23_RS12775 | Not Available | Negative | 2650876 - 2652333 | 52538.4 |
| dmt family transporter | RCA23_RS12780 | Not Available | Positive | 2652541 - 2653368 | 29683.6 |
| nicotinate-nucleotide adenylyltransferase | RCA23_RS12785 | Not Available | Negative | 2653365 - 2653964 | 22301.7 |
| energy-dependent translational throttle protein etta | RCA23_RS12790 | Not Available | Positive | 2654101 - 2655756 | 61254.7 |
| cold-shock protein | RCA23_RS12795 | Not Available | Positive | 2655999 - 2656205 | 7300.37 |
| glutamate--trna ligase | RCA23_RS12800 | Not Available | Negative | 2656327 - 2657646 | 48154.5 |
| nad+ synthase | RCA23_RS12805 | Not Available | Negative | 2657714 - 2659375 | 60111.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
