Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrimidine 5'-nucleotidase | RCA23_RS01240 | Not Available | Negative | 272161 - 272859 | 26190.8 |
| fcd domain-containing protein | RCA23_RS01245 | Not Available | Positive | 272964 - 273620 | 24069.8 |
| glycosyltransferase | RCA23_RS01250 | Not Available | Negative | 273580 - 275505 | 72065.9 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | RCA23_RS01255 | Not Available | Negative | 275577 - 276740 | 41624.1 |
| gatb/yqey domain-containing protein | RCA23_RS01260 | Not Available | Positive | 276880 - 277338 | 16703.2 |
| duf2244 domain-containing protein | RCA23_RS01265 | Not Available | Negative | 277379 - 277906 | 19118.0 |
| cytochrome c oxidase subunit i | RCA23_RS01275 | Not Available | Negative | 278162 - 279835 | 61976.9 |
| lipoyl(octanoyl) transferase lipb | RCA23_RS01280 | Not Available | Negative | 280038 - 280700 | 24419.1 |
| lyttr family dna-binding domain-containing protein | RCA23_RS15880 | Not Available | Negative | 280700 - 281476 | 27731.3 |
| duf2306 domain-containing protein | RCA23_RS01290 | Not Available | Positive | 281566 - 282084 | 19231.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
