Planktomarina temperata RCA23

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Planktomarina

Description

Planktomarina temperata RCA23 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This marine microbe is part of the diverse community of microorganisms found in coastal waters, where it likely plays a role in nutrient cycling and the degradation of organic matter. As a member of the Planktomarina genus, P. temperata RCA23 is adapted to planktonic lifestyles, which may contribute to its ecological significance in marine ecosystems. The rod shape of this bacterium may enhance its motility and nutrient uptake, facilitating its survival in the dynamic and competitive environments of coastal waters. Given its aerobic nature, Planktomarina temperata RCA23 relies on oxygen for its metabolic processes, indicating its potential involvement in aerobic decomposition and interactions with other microbial communities. Understanding its physiological traits could provide insights into the roles of similar marine bacteria in biogeochemical cycles, particularly in relation to organic matter processing and the overall health of marine ecosystems. Future research may reveal more about its specific interactions within these environments, emphasizing the importance of such microbes in maintaining ecological balance in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPlanktomarina
SpeciesPlanktomarina temperata
StrainRCA23

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNorwegian fjord
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planktomarina temperata RCA23 chromosome, complete genome.

Gene Summary

Adenine Count

759356 bp

Thymine Count

765055 bp

Guanine Count

886270 bp

Cytosine Count

877441 bp

Genome Length

3288122 bp

Protein-coding Genes

3150 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanyl-d-alanine carboxypeptidase family proteinRCA23_RS12715Not AvailablePositive2636965 - 263813141639.2
dtmp kinaseRCA23_RS12720Not AvailablePositive2638132 - 263874622170.4
dna polymerase iii subunit delta'RCA23_RS12725Not AvailablePositive2638743 - 263986739828.1
tatd family hydrolaseRCA23_RS12730Not AvailablePositive2639867 - 264065228790.1
mbl fold metallo-hydrolaseRCA23_RS12735Not AvailablePositive2640649 - 264143728858.4
aec family transporterRCA23_RS12740Not AvailablePositive2641439 - 264236832981.1
nad(p)/fad-dependent oxidoreductaseRCA23_RS12745Not AvailableNegative2642372 - 264345737869.4
excinuclease abc subunit uvrbRCA23_RS12750Not AvailablePositive2643645 - 264583482104.6
glycosyl hydrolase family 28-related proteinRCA23_RS12755Not AvailableNegative2645909 - 264769964952.2
hypothetical proteinRCA23_RS16925Not AvailableNegative2647642 - 264819619508.4

Displaying genes 2581 – 2590 of 3201 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.