Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lyse family translocator | RCA23_RS12670 | Not Available | Negative | 2623558 - 2624148 | 20985.3 |
| hypothetical protein | RCA23_RS12675 | Not Available | Positive | 2624441 - 2624851 | 14427.4 |
| taxi family trap transporter solute-binding subunit | RCA23_RS12680 | Not Available | Negative | 2624925 - 2625998 | 39404.0 |
| yjbh domain-containing protein | RCA23_RS16805 | Not Available | Negative | 2626152 - 2626402 | 9529.69 |
| sdr family oxidoreductase | RCA23_RS12685 | Not Available | Positive | 2626948 - 2627676 | 25954.7 |
| hypothetical protein | RCA23_RS12690 | Not Available | Negative | 2628631 - 2631816 | 118554.0 |
| tetratricopeptide repeat-containing sulfotransferase family protein | RCA23_RS16070 | Not Available | Positive | 2631920 - 2634466 | 93931.5 |
| duf6538 domain-containing protein | RCA23_RS12705 | Not Available | Negative | 2635342 - 2636511 | 43453.1 |
| Trna-ser | Not Available | Not Available | Positive | 2636612 - 2636701 | Not Available |
| hypothetical protein | RCA23_RS16590 | Not Available | Negative | 2636734 - 2636949 | 7985.61 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
