Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribokinase | RCA23_RS12565 | Not Available | Negative | 2602047 - 2602967 | 31280.3 |
| rbsd/fucu family protein | RCA23_RS12570 | Not Available | Negative | 2602964 - 2603416 | 16504.0 |
| abc transporter atp-binding protein | RCA23_RS12575 | Not Available | Negative | 2603489 - 2604556 | 39298.8 |
| extracellular solute-binding protein | RCA23_RS12580 | Not Available | Positive | 2604805 - 2606439 | 59286.1 |
| carbohydrate abc transporter permease | RCA23_RS12585 | Not Available | Positive | 2606509 - 2607615 | 41878.1 |
| carbohydrate abc transporter permease | RCA23_RS12590 | Not Available | Positive | 2607617 - 2608534 | 33748.9 |
| fucose isomerase | RCA23_RS12595 | Not Available | Negative | 2608537 - 2610024 | 54756.1 |
| sis domain-containing protein | RCA23_RS12600 | Not Available | Negative | 2610162 - 2610701 | 18958.4 |
| fggy-family carbohydrate kinase | RCA23_RS12605 | Not Available | Negative | 2610716 - 2612206 | 53829.2 |
| m42 family metallopeptidase | RCA23_RS12610 | Not Available | Negative | 2612203 - 2613273 | 37825.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
