Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ectoine hydrolase doea | RCA23_RS12415 | Not Available | Negative | 2570683 - 2571870 | 44038.7 |
| dmt family transporter | RCA23_RS12420 | Not Available | Positive | 2572018 - 2572968 | 33779.4 |
| amp-binding protein | RCA23_RS12425 | Not Available | Positive | 2573067 - 2574635 | 56246.8 |
| aec family transporter | RCA23_RS12430 | Not Available | Negative | 2574737 - 2575639 | 31889.3 |
| vit1/ccc1 transporter family protein | RCA23_RS12435 | Not Available | Negative | 2575760 - 2576464 | 24187.1 |
| lrp/asnc family transcriptional regulator | RCA23_RS12440 | Not Available | Negative | 2576587 - 2577015 | 15807.4 |
| arginase | RCA23_RS12445 | Not Available | Positive | 2577133 - 2578062 | 32843.8 |
| ornithine cyclodeaminase | RCA23_RS12450 | Not Available | Positive | 2578064 - 2579122 | 38361.0 |
| bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase puta | RCA23_RS12455 | Not Available | Positive | 2579122 - 2582481 | 119956.0 |
| hypothetical protein | RCA23_RS12460 | Not Available | Negative | 2582581 - 2583144 | 20812.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
