Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sterol desaturase family protein | RCA23_RS12165 | Not Available | Positive | 2530224 - 2531015 | 30070.2 |
| hypothetical protein | RCA23_RS12170 | Not Available | Positive | 2531012 - 2531632 | 22755.1 |
| histidine phosphatase family protein | RCA23_RS12175 | Not Available | Positive | 2531629 - 2532126 | 17578.0 |
| amino acid abc transporter atp-binding protein | RCA23_RS12180 | Not Available | Negative | 2532150 - 2532914 | 28698.8 |
| amino acid abc transporter permease | RCA23_RS12185 | Not Available | Negative | 2532928 - 2534220 | 47514.5 |
| abc transporter permease subunit | RCA23_RS12190 | Not Available | Negative | 2534222 - 2535436 | 44267.3 |
| amino acid abc transporter substrate-binding protein | RCA23_RS12195 | Not Available | Negative | 2535548 - 2536564 | 35492.9 |
| atp12 family chaperone protein | RCA23_RS12200 | Not Available | Negative | 2536778 - 2537482 | 25882.5 |
| had-ia family hydrolase | RCA23_RS12205 | Not Available | Negative | 2537479 - 2538147 | 23833.7 |
| rlua family pseudouridine synthase | RCA23_RS12210 | Not Available | Negative | 2538144 - 2539184 | 38392.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
