Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l34 | RCA23_RS12115 | Not Available | Positive | 2522654 - 2522788 | 5137.46 |
| ribonuclease p protein component | RCA23_RS12120 | Not Available | Positive | 2522803 - 2523192 | 14382.5 |
| membrane protein insertion efficiency factor yidd | RCA23_RS12125 | Not Available | Positive | 2523189 - 2523428 | 8910.88 |
| hypothetical protein | RCA23_RS12130 | Not Available | Positive | 2523749 - 2523964 | 8388.69 |
| trna 2-thiocytidine(32) synthetase ttca | RCA23_RS12135 | Not Available | Positive | 2524020 - 2524874 | 32265.1 |
| eal domain-containing protein | RCA23_RS12140 | Not Available | Positive | 2524928 - 2525959 | 37765.4 |
| membrane protein insertase yidc | RCA23_RS12145 | Not Available | Positive | 2526067 - 2527851 | 65564.0 |
| mosc domain-containing protein | RCA23_RS12150 | Not Available | Positive | 2527853 - 2528602 | 27953.0 |
| ribosome biogenesis gtp-binding protein yiha/ysxc | RCA23_RS12155 | Not Available | Positive | 2528599 - 2529249 | 23815.9 |
| acetylglutamate kinase | RCA23_RS12160 | Not Available | Positive | 2529343 - 2530209 | 29848.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
