Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | RCA23_RS11970 | Not Available | Negative | 2493587 - 2494711 | 40856.4 |
| abc transporter permease | RCA23_RS11975 | Not Available | Negative | 2494786 - 2495571 | 28837.0 |
| abc transporter permease | RCA23_RS11980 | Not Available | Negative | 2495575 - 2496501 | 34343.8 |
| abc transporter substrate-binding protein | RCA23_RS16060 | Not Available | Negative | 2496676 - 2497743 | 39058.9 |
| yjbh domain-containing protein | RCA23_RS16300 | Not Available | Positive | 2498070 - 2498174 | 3300.73 |
| hypothetical protein | RCA23_RS16570 | Not Available | Negative | 2498131 - 2498385 | 9399.5 |
| hypothetical protein | RCA23_RS11995 | Not Available | Negative | 2498401 - 2498724 | 11176.2 |
| sdr family nad(p)-dependent oxidoreductase | RCA23_RS12000 | Not Available | Negative | 2498760 - 2499506 | 26216.8 |
| l-rhamnonate dehydratase | RCA23_RS12005 | Not Available | Negative | 2499526 - 2500818 | 47123.1 |
| abc transporter permease | RCA23_RS12010 | Not Available | Negative | 2500861 - 2501838 | 33779.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
