Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetoacetate decarboxylase | RCA23_RS11875 | Not Available | Negative | 2474872 - 2475636 | 28471.1 |
| gfo/idh/moca family protein | RCA23_RS11880 | Not Available | Negative | 2475637 - 2476680 | 38110.4 |
| fadr/gntr family transcriptional regulator | RCA23_RS11885 | Not Available | Negative | 2476673 - 2477416 | 27267.0 |
| abc transporter permease | RCA23_RS11890 | Not Available | Negative | 2477413 - 2478408 | 35607.8 |
| abc transporter permease | RCA23_RS11895 | Not Available | Negative | 2478405 - 2479472 | 37792.3 |
| atp-binding cassette domain-containing protein | RCA23_RS11900 | Not Available | Negative | 2479472 - 2480983 | 54431.7 |
| rhamnose abc transporter substrate-binding protein | RCA23_RS11905 | Not Available | Negative | 2481056 - 2482093 | 36325.1 |
| mandelate racemase/muconate lactonizing enzyme family protein | RCA23_RS11910 | Not Available | Positive | 2482310 - 2483446 | 41134.9 |
| sugar phosphate isomerase/epimerase family protein | RCA23_RS11915 | Not Available | Positive | 2483461 - 2484276 | 29550.6 |
| aldo/keto reductase | RCA23_RS11920 | Not Available | Positive | 2484419 - 2484691 | 9664.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
