Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | RCA23_RS11575 | Not Available | Negative | 2417266 - 2418075 | 30058.5 |
| carbohydrate abc transporter permease | RCA23_RS11580 | Not Available | Negative | 2418072 - 2418965 | 33245.9 |
| abc transporter substrate-binding protein | RCA23_RS11585 | Not Available | Negative | 2419050 - 2420318 | 45457.5 |
| abc transporter atp-binding protein | RCA23_RS11590 | Not Available | Negative | 2420382 - 2421401 | 36763.6 |
| deor family transcriptional regulator | RCA23_RS11595 | Not Available | Negative | 2421398 - 2422177 | 28517.5 |
| had-iib family hydrolase | RCA23_RS11600 | Not Available | Positive | 2422599 - 2423399 | 29172.3 |
| yjbh domain-containing protein | RCA23_RS16795 | Not Available | Negative | 2423648 - 2423734 | 3421.99 |
| eama family transporter | RCA23_RS11605 | Not Available | Positive | 2423990 - 2424865 | 31494.8 |
| pqq-dependent sugar dehydrogenase | RCA23_RS11610 | Not Available | Positive | 2424987 - 2426117 | 41722.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | RCA23_RS11615 | Not Available | Positive | 2426307 - 2427080 | 27973.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
