Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate-binding domain-containing protein | RCA23_RS11530 | Not Available | Negative | 2406443 - 2407339 | 33703.6 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | RCA23_RS11535 | Not Available | Positive | 2407478 - 2408791 | 47171.9 |
| sn-glycerol-3-phosphate abc transporter permease ugpa | RCA23_RS11540 | Not Available | Positive | 2408867 - 2409748 | 32769.4 |
| sn-glycerol-3-phosphate abc transporter permease ugpe | RCA23_RS11545 | Not Available | Positive | 2409790 - 2410626 | 31005.4 |
| abc transporter atp-binding protein | RCA23_RS11550 | Not Available | Positive | 2410634 - 2411680 | 38063.5 |
| glycerophosphodiester phosphodiesterase family protein | RCA23_RS11555 | Not Available | Positive | 2411680 - 2412570 | 33109.7 |
| yjbh domain-containing protein | RCA23_RS16790 | Not Available | Negative | 2412723 - 2412824 | 3997.02 |
| glycerol-3-phosphate dehydrogenase | RCA23_RS11560 | Not Available | Negative | 2413001 - 2414629 | 60563.4 |
| na/pi cotransporter family protein | RCA23_RS11565 | Not Available | Negative | 2414794 - 2416449 | 59032.2 |
| phosphodiesterase | RCA23_RS11570 | Not Available | Negative | 2416478 - 2417269 | 28171.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
