Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amp-binding protein | RCA23_RS01090 | Not Available | Negative | 239398 - 241023 | 58347.1 |
| dmt family transporter | RCA23_RS01095 | Not Available | Positive | 241093 - 241995 | 32677.0 |
| 3-hydroxyacyl-coa dehydrogenase nad-binding domain-containing protein | RCA23_RS01100 | Not Available | Negative | 242024 - 244207 | 77973.6 |
| hypothetical protein | RCA23_RS01105 | Not Available | Negative | 244219 - 244632 | 16004.0 |
| acetyl-coa c-acetyltransferase | RCA23_RS01110 | Not Available | Negative | 244654 - 245865 | 42274.0 |
| glutathione s-transferase family protein | RCA23_RS01115 | Not Available | Negative | 245877 - 246509 | 23545.9 |
| acyl-coa dehydrogenase c-terminal domain-containing protein | RCA23_RS01120 | Not Available | Negative | 246553 - 248334 | 63405.5 |
| merr family transcriptional regulator | RCA23_RS01125 | Not Available | Negative | 248357 - 248746 | 15407.5 |
| merr family transcriptional regulator | RCA23_RS01130 | Not Available | Negative | 248883 - 249251 | 14367.4 |
| putative manganese transporter | RCA23_RS01135 | Not Available | Negative | 249299 - 250441 | 39700.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
