Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid desaturase | RCA23_RS11250 | Not Available | Negative | 2359235 - 2360146 | 34916.2 |
| helix-turn-helix domain-containing protein | RCA23_RS11255 | Not Available | Positive | 2360242 - 2361102 | 31718.3 |
| sdr family oxidoreductase | RCA23_RS11260 | Not Available | Negative | 2361099 - 2361854 | 26112.2 |
| carnitine 3-dehydrogenase | RCA23_RS11265 | Not Available | Negative | 2361851 - 2363320 | 54094.0 |
| 3-keto-5-aminohexanoate cleavage protein | RCA23_RS11270 | Not Available | Negative | 2363357 - 2364271 | 32353.2 |
| glxa family transcriptional regulator | RCA23_RS11275 | Not Available | Positive | 2364345 - 2365316 | 35487.8 |
| aldo/keto reductase | RCA23_RS11280 | Not Available | Negative | 2365322 - 2366365 | 38040.2 |
| imua family protein | RCA23_RS11285 | Not Available | Positive | 2366465 - 2367088 | 22684.5 |
| mfs transporter | RCA23_RS11290 | Not Available | Positive | 2367182 - 2368417 | 43353.8 |
| methionine--trna ligase | RCA23_RS11295 | Not Available | Positive | 2368475 - 2370187 | 64126.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
