Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter substrate-binding protein | RCA23_RS11200 | Not Available | Positive | 2349936 - 2351048 | 39422.0 |
| trap transporter large permease subunit | RCA23_RS11205 | Not Available | Positive | 2351168 - 2353642 | 89953.2 |
| trimethylamine methyltransferase family protein | RCA23_RS11210 | Not Available | Negative | 2353818 - 2355374 | 57578.8 |
| had family hydrolase | RCA23_RS11215 | Not Available | Negative | 2355458 - 2356156 | 24442.3 |
| duf3572 domain-containing protein | RCA23_RS11220 | Not Available | Negative | 2356156 - 2356437 | 10102.0 |
| hypothetical protein | RCA23_RS11225 | Not Available | Negative | 2356512 - 2356799 | 10857.4 |
| ef-hand domain-containing protein | RCA23_RS11230 | Not Available | Negative | 2356789 - 2357079 | 9760.46 |
| duf983 domain-containing protein | RCA23_RS11235 | Not Available | Positive | 2357261 - 2357656 | 14433.9 |
| nudix domain-containing protein | RCA23_RS11240 | Not Available | Positive | 2357666 - 2358352 | 25061.7 |
| membrane protein | RCA23_RS11245 | Not Available | Negative | 2358332 - 2359231 | 32105.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
