Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 2341011 - 2341085 | Not Available |
| sulfopyruvate decarboxylase subunit beta | RCA23_RS11155 | Not Available | Negative | 2341321 - 2341884 | 19808.0 |
| sulfopyruvate decarboxylase subunit alpha | RCA23_RS11160 | Not Available | Negative | 2341886 - 2342383 | 18157.2 |
| alcohol dehydrogenase catalytic domain-containing protein | RCA23_RS11165 | Not Available | Negative | 2342394 - 2343389 | 34571.9 |
| sdr family nad(p)-dependent oxidoreductase | RCA23_RS11170 | Not Available | Negative | 2343386 - 2344144 | 26160.0 |
| histidinol dehydrogenase | RCA23_RS11175 | Not Available | Negative | 2344148 - 2345455 | 46281.9 |
| laci family dna-binding transcriptional regulator | RCA23_RS11180 | Not Available | Positive | 2345518 - 2346576 | 37574.2 |
| iclr family transcriptional regulator | RCA23_RS11185 | Not Available | Negative | 2346614 - 2347369 | 28559.7 |
| gmc family oxidoreductase | RCA23_RS11190 | Not Available | Positive | 2347514 - 2349115 | 58391.8 |
| terc family protein | RCA23_RS11195 | Not Available | Positive | 2349149 - 2349817 | 23905.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
