Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | RCA23_RS11005 | Not Available | Negative | 2307324 - 2308460 | 40821.9 |
| riboflavin synthase | RCA23_RS11010 | Not Available | Negative | 2308464 - 2309051 | 20553.3 |
| capsule biosynthesis protein | RCA23_RS11015 | Not Available | Positive | 2309210 - 2310511 | 49358.2 |
| polysaccharide biosynthesis/export family protein | RCA23_RS11020 | Not Available | Positive | 2310612 - 2311748 | 41080.3 |
| capsular polysaccharide biosynthesis protein | RCA23_RS11025 | Not Available | Positive | 2311750 - 2313762 | 73948.8 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | RCA23_RS11030 | Not Available | Negative | 2313759 - 2314826 | 36894.6 |
| transcriptional regulator nrdr | RCA23_RS11035 | Not Available | Negative | 2314850 - 2315317 | 17896.5 |
| rna polymerase sigma factor rpod | RCA23_RS11040 | Not Available | Negative | 2315515 - 2317485 | 74528.8 |
| dna primase | RCA23_RS11045 | Not Available | Negative | 2317602 - 2319548 | 71784.4 |
| sarcosine oxidase subunit gamma | RCA23_RS11050 | Not Available | Negative | 2319557 - 2320108 | 20031.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
