Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhomboid family intramembrane serine protease | RCA23_RS10955 | Not Available | Positive | 2296952 - 2297626 | 23942.5 |
| murein biosynthesis integral membrane protein murj | RCA23_RS10960 | Not Available | Negative | 2297638 - 2299173 | 54771.6 |
| [protein-pii] uridylyltransferase | RCA23_RS10965 | Not Available | Negative | 2299170 - 2301938 | 103833.0 |
| penicillin-binding protein activator | RCA23_RS10970 | Not Available | Negative | 2301941 - 2303131 | 41151.2 |
| 16s rrna (cytidine(1402)-2'-o)-methyltransferase | RCA23_RS10975 | Not Available | Positive | 2303206 - 2304075 | 30949.5 |
| yran family protein | RCA23_RS10980 | Not Available | Positive | 2304080 - 2304448 | 13574.0 |
| glutathione synthase | RCA23_RS10985 | Not Available | Positive | 2304547 - 2305485 | 34742.8 |
| alpha/beta hydrolase | RCA23_RS16035 | Not Available | Negative | 2305503 - 2306330 | 29364.8 |
| transcription antitermination factor nusb | RCA23_RS10995 | Not Available | Negative | 2306327 - 2306806 | 17470.8 |
| 6,7-dimethyl-8-ribityllumazine synthase | RCA23_RS11000 | Not Available | Negative | 2306803 - 2307324 | 18331.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
