Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine dehydrogenase accessory protein xdhc | RCA23_RS10810 | Not Available | Positive | 2266266 - 2267186 | 32738.8 |
| abc transporter atp-binding protein | RCA23_RS10815 | Not Available | Positive | 2267183 - 2268688 | 52986.1 |
| abc transporter permease | RCA23_RS10820 | Not Available | Positive | 2268675 - 2269760 | 38729.5 |
| abc transporter permease subunit | RCA23_RS10825 | Not Available | Positive | 2269810 - 2270742 | 31792.0 |
| bmp family abc transporter substrate-binding protein | RCA23_RS10830 | Not Available | Positive | 2270770 - 2271849 | 38186.7 |
| nad(p)/fad-dependent oxidoreductase | RCA23_RS10835 | Not Available | Positive | 2271933 - 2273012 | 38661.8 |
| fad-dependent oxidoreductase | RCA23_RS10840 | Not Available | Negative | 2273065 - 2275563 | 93255.6 |
| pantoate--beta-alanine ligase | RCA23_RS10845 | Not Available | Positive | 2275772 - 2276626 | 30977.5 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | RCA23_RS10850 | Not Available | Positive | 2276623 - 2277435 | 28954.2 |
| sh3 domain-containing protein | RCA23_RS10855 | Not Available | Positive | 2277541 - 2277984 | 16465.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
