Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiol-disulfide oxidoreductase dcc family protein | RCA23_RS10760 | Not Available | Negative | 2251846 - 2252217 | 13955.0 |
| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | RCA23_RS10765 | Not Available | Negative | 2252333 - 2254594 | 82279.3 |
| duf1489 family protein | RCA23_RS10770 | Not Available | Positive | 2254721 - 2255152 | 15677.2 |
| atp phosphoribosyltransferase | RCA23_RS10775 | Not Available | Negative | 2255156 - 2255833 | 24306.3 |
| atp phosphoribosyltransferase regulatory subunit | RCA23_RS10780 | Not Available | Negative | 2255827 - 2256873 | 37379.7 |
| histidine--trna ligase | RCA23_RS10785 | Not Available | Negative | 2256870 - 2258369 | 54400.9 |
| slyx family protein | RCA23_RS10790 | Not Available | Positive | 2258502 - 2258699 | 7180.43 |
| dna polymerase iii subunit alpha | RCA23_RS10795 | Not Available | Negative | 2258738 - 2262238 | 128108.0 |
| xanthine dehydrogenase small subunit | RCA23_RS10800 | Not Available | Positive | 2262596 - 2263969 | 49224.8 |
| xanthine dehydrogenase molybdopterin binding subunit | RCA23_RS10805 | Not Available | Positive | 2263966 - 2266269 | 82548.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
