Planktomarina temperata RCA23

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Planktomarina

Description

Planktomarina temperata RCA23 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This marine microbe is part of the diverse community of microorganisms found in coastal waters, where it likely plays a role in nutrient cycling and the degradation of organic matter. As a member of the Planktomarina genus, P. temperata RCA23 is adapted to planktonic lifestyles, which may contribute to its ecological significance in marine ecosystems. The rod shape of this bacterium may enhance its motility and nutrient uptake, facilitating its survival in the dynamic and competitive environments of coastal waters. Given its aerobic nature, Planktomarina temperata RCA23 relies on oxygen for its metabolic processes, indicating its potential involvement in aerobic decomposition and interactions with other microbial communities. Understanding its physiological traits could provide insights into the roles of similar marine bacteria in biogeochemical cycles, particularly in relation to organic matter processing and the overall health of marine ecosystems. Future research may reveal more about its specific interactions within these environments, emphasizing the importance of such microbes in maintaining ecological balance in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPlanktomarina
SpeciesPlanktomarina temperata
StrainRCA23

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNorwegian fjord
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planktomarina temperata RCA23 chromosome, complete genome.

Gene Summary

Adenine Count

759356 bp

Thymine Count

765055 bp

Guanine Count

886270 bp

Cytosine Count

877441 bp

Genome Length

3288122 bp

Protein-coding Genes

3150 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pp_02099RCA23_RS10510Not AvailableNegative2202455 - 2202793Not Available
pyrroline-5-carboxylate reductaseRCA23_RS10515Not AvailableNegative2202786 - 220360128075.1
ybjn domain-containing proteinRCA23_RS10520Not AvailableNegative2203635 - 220413819022.5
accessory factor ubik family proteinRCA23_RS10525Not AvailableNegative2204427 - 220470810310.3
prolipoprotein diacylglyceryl transferaseRCA23_RS10530Not AvailablePositive2204811 - 220574033809.9
class i sam-dependent methyltransferaseRCA23_RS10535Not AvailablePositive2205707 - 220679839064.9
peptidoglycan editing factor pgefRCA23_RS10540Not AvailablePositive2206795 - 220755026987.0
tir domain-containing proteinRCA23_RS10545Not AvailableNegative2207769 - 220877037202.7
lrp/asnc family transcriptional regulatorRCA23_RS10550Not AvailableNegative2208988 - 220948218348.2
thioredoxin-disulfide reductaseRCA23_RS10555Not AvailablePositive2209668 - 221060933714.4

Displaying genes 2131 – 2140 of 3201 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.