Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pp_02099 | RCA23_RS10510 | Not Available | Negative | 2202455 - 2202793 | Not Available |
| pyrroline-5-carboxylate reductase | RCA23_RS10515 | Not Available | Negative | 2202786 - 2203601 | 28075.1 |
| ybjn domain-containing protein | RCA23_RS10520 | Not Available | Negative | 2203635 - 2204138 | 19022.5 |
| accessory factor ubik family protein | RCA23_RS10525 | Not Available | Negative | 2204427 - 2204708 | 10310.3 |
| prolipoprotein diacylglyceryl transferase | RCA23_RS10530 | Not Available | Positive | 2204811 - 2205740 | 33809.9 |
| class i sam-dependent methyltransferase | RCA23_RS10535 | Not Available | Positive | 2205707 - 2206798 | 39064.9 |
| peptidoglycan editing factor pgef | RCA23_RS10540 | Not Available | Positive | 2206795 - 2207550 | 26987.0 |
| tir domain-containing protein | RCA23_RS10545 | Not Available | Negative | 2207769 - 2208770 | 37202.7 |
| lrp/asnc family transcriptional regulator | RCA23_RS10550 | Not Available | Negative | 2208988 - 2209482 | 18348.2 |
| thioredoxin-disulfide reductase | RCA23_RS10555 | Not Available | Positive | 2209668 - 2210609 | 33714.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
