Planktomarina temperata RCA23

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Planktomarina

Description

Planktomarina temperata RCA23 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This marine microbe is part of the diverse community of microorganisms found in coastal waters, where it likely plays a role in nutrient cycling and the degradation of organic matter. As a member of the Planktomarina genus, P. temperata RCA23 is adapted to planktonic lifestyles, which may contribute to its ecological significance in marine ecosystems. The rod shape of this bacterium may enhance its motility and nutrient uptake, facilitating its survival in the dynamic and competitive environments of coastal waters. Given its aerobic nature, Planktomarina temperata RCA23 relies on oxygen for its metabolic processes, indicating its potential involvement in aerobic decomposition and interactions with other microbial communities. Understanding its physiological traits could provide insights into the roles of similar marine bacteria in biogeochemical cycles, particularly in relation to organic matter processing and the overall health of marine ecosystems. Future research may reveal more about its specific interactions within these environments, emphasizing the importance of such microbes in maintaining ecological balance in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPlanktomarina
SpeciesPlanktomarina temperata
StrainRCA23

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNorwegian fjord
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planktomarina temperata RCA23 chromosome, complete genome.

Gene Summary

Adenine Count

759356 bp

Thymine Count

765055 bp

Guanine Count

886270 bp

Cytosine Count

877441 bp

Genome Length

3288122 bp

Protein-coding Genes

3150 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phenylacetic acid degradation bifunctional protein paazRCA23_RS10460Not AvailableNegative2191868 - 219391672723.9
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paagRCA23_RS10465Not AvailablePositive2194006 - 219479127631.1
hydroxyphenylacetyl-coa thioesterase paaiRCA23_RS10470Not AvailablePositive2194793 - 219523315428.2
3-oxoadipyl-coa thiolaseRCA23_RS10475Not AvailablePositive2195230 - 219643241837.6
phenylacetate--coa ligase paakRCA23_RS10480Not AvailablePositive2196443 - 219772646949.2
tetr/acrr family transcriptional regulatorRCA23_RS10485Not AvailablePositive2197730 - 219834423102.8
type ii 3-dehydroquinate dehydrataseRCA23_RS10490Not AvailableNegative2198341 - 219878715985.3
pyridoxal phosphate-dependent decarboxylase family proteinRCA23_RS10495Not AvailableNegative2198869 - 220026050763.6
sdr family nad(p)-dependent oxidoreductaseRCA23_RS10500Not AvailablePositive2200544 - 220138329850.4
gnat family n-acetyltransferaseRCA23_RS16665Not AvailableNegative2201403 - 220238935606.8

Displaying genes 2121 – 2130 of 3201 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.