Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetic acid degradation bifunctional protein paaz | RCA23_RS10460 | Not Available | Negative | 2191868 - 2193916 | 72723.9 |
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paag | RCA23_RS10465 | Not Available | Positive | 2194006 - 2194791 | 27631.1 |
| hydroxyphenylacetyl-coa thioesterase paai | RCA23_RS10470 | Not Available | Positive | 2194793 - 2195233 | 15428.2 |
| 3-oxoadipyl-coa thiolase | RCA23_RS10475 | Not Available | Positive | 2195230 - 2196432 | 41837.6 |
| phenylacetate--coa ligase paak | RCA23_RS10480 | Not Available | Positive | 2196443 - 2197726 | 46949.2 |
| tetr/acrr family transcriptional regulator | RCA23_RS10485 | Not Available | Positive | 2197730 - 2198344 | 23102.8 |
| type ii 3-dehydroquinate dehydratase | RCA23_RS10490 | Not Available | Negative | 2198341 - 2198787 | 15985.3 |
| pyridoxal phosphate-dependent decarboxylase family protein | RCA23_RS10495 | Not Available | Negative | 2198869 - 2200260 | 50763.6 |
| sdr family nad(p)-dependent oxidoreductase | RCA23_RS10500 | Not Available | Positive | 2200544 - 2201383 | 29850.4 |
| gnat family n-acetyltransferase | RCA23_RS16665 | Not Available | Negative | 2201403 - 2202389 | 35606.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
