Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter large permease | RCA23_RS10410 | Not Available | Negative | 2183245 - 2184561 | 46698.7 |
| trap transporter small permease | RCA23_RS10415 | Not Available | Negative | 2184558 - 2185139 | 20599.7 |
| trap transporter substrate-binding protein | RCA23_RS10420 | Not Available | Negative | 2185214 - 2186242 | 36601.9 |
| phytanoyl-coa dioxygenase family protein | RCA23_RS10425 | Not Available | Positive | 2186550 - 2187362 | 30319.6 |
| 2fe-2s iron-sulfur cluster-binding protein | RCA23_RS10430 | Not Available | Negative | 2187382 - 2188449 | 38373.2 |
| 1,2-phenylacetyl-coa epoxidase subunit paad | RCA23_RS10435 | Not Available | Negative | 2188462 - 2188950 | 17312.7 |
| 1,2-phenylacetyl-coa epoxidase subunit paac | RCA23_RS10440 | Not Available | Negative | 2188944 - 2189696 | 27625.9 |
| 1,2-phenylacetyl-coa epoxidase subunit paab | RCA23_RS10445 | Not Available | Negative | 2189696 - 2189986 | 10784.7 |
| 1,2-phenylacetyl-coa epoxidase subunit paaa | RCA23_RS10450 | Not Available | Negative | 2190007 - 2190999 | 36966.9 |
| hypothetical protein | RCA23_RS10455 | Not Available | Negative | 2191050 - 2191871 | 30422.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
