Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide assembly protein lapa domain-containing protein | RCA23_RS10210 | Not Available | Negative | 2139786 - 2140139 | 13066.4 |
| integration host factor subunit beta | RCA23_RS10215 | Not Available | Negative | 2140141 - 2140422 | 10712.0 |
| 30s ribosomal protein s1 | RCA23_RS10220 | Not Available | Negative | 2140684 - 2142360 | 61183.8 |
| hypothetical protein | RCA23_RS10225 | Not Available | Positive | 2142605 - 2142934 | 12150.3 |
| laci family dna-binding transcriptional regulator | RCA23_RS10230 | Not Available | Negative | 2142946 - 2143968 | 36892.6 |
| phytanoyl-coa dioxygenase family protein | RCA23_RS10235 | Not Available | Positive | 2144050 - 2145192 | 41828.4 |
| aldo/keto reductase | RCA23_RS10240 | Not Available | Negative | 2145199 - 2146197 | 35765.4 |
| d(cmp) kinase | RCA23_RS10245 | Not Available | Negative | 2146184 - 2146855 | 23441.7 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | RCA23_RS10250 | Not Available | Negative | 2146852 - 2148201 | 46755.2 |
| trna (guanosine(46)-n7)-methyltransferase trmb | RCA23_RS10255 | Not Available | Negative | 2148275 - 2148961 | 26271.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
