Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein tolr | RCA23_RS10110 | Not Available | Negative | 2122056 - 2122520 | 16416.0 |
| protein tolq | RCA23_RS10115 | Not Available | Negative | 2122530 - 2123204 | 23849.0 |
| tol-pal system-associated acyl-coa thioesterase | RCA23_RS10120 | Not Available | Negative | 2123296 - 2123685 | 14633.5 |
| hypothetical protein | RCA23_RS10125 | Not Available | Negative | 2123682 - 2124311 | 23196.8 |
| holliday junction branch migration dna helicase ruvb | RCA23_RS10130 | Not Available | Negative | 2124398 - 2125447 | 38173.0 |
| holliday junction branch migration protein ruva | RCA23_RS10135 | Not Available | Negative | 2125444 - 2126118 | 23215.3 |
| crossover junction endodeoxyribonuclease ruvc | RCA23_RS10140 | Not Available | Negative | 2126115 - 2126621 | 17630.3 |
| duf1127 domain-containing protein | RCA23_RS10145 | Not Available | Positive | 2126898 - 2127101 | 7454.91 |
| 50s ribosomal protein l11 methyltransferase | RCA23_RS10150 | Not Available | Negative | 2127186 - 2128058 | 30390.4 |
| peptide-methionine (s)-s-oxide reductase msra | RCA23_RS10155 | Not Available | Negative | 2128189 - 2128842 | 23616.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
