Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit delta | RCA23_RS10010 | Not Available | Positive | 2100622 - 2100909 | 10988.9 |
| sarcosine oxidase subunit alpha family protein | RCA23_RS10015 | Not Available | Positive | 2100906 - 2103860 | 105804.0 |
| sarcosine oxidase subunit gamma | RCA23_RS10020 | Not Available | Positive | 2103853 - 2104413 | 20075.1 |
| glxa family transcriptional regulator | RCA23_RS10025 | Not Available | Negative | 2104446 - 2105450 | 36263.5 |
| cupin domain-containing protein | RCA23_RS10030 | Not Available | Positive | 2105519 - 2106172 | 23359.8 |
| hypothetical protein | RCA23_RS10035 | Not Available | Negative | 2106183 - 2106596 | 14553.3 |
| nuclear transport factor 2 family protein | RCA23_RS10040 | Not Available | Positive | 2107109 - 2107477 | 14195.7 |
| hypothetical protein | RCA23_RS10045 | Not Available | Positive | 2107579 - 2107743 | 6080.63 |
| paai family thioesterase | RCA23_RS10050 | Not Available | Negative | 2107835 - 2108227 | 13772.9 |
| ligase-associated dna damage response endonuclease pdem | RCA23_RS10055 | Not Available | Negative | 2108230 - 2108892 | 24253.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
