Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i dna topoisomerase | RCA23_RS09960 | Not Available | Positive | 2087889 - 2090483 | 95609.2 |
| class ii fructose-bisphosphate aldolase | RCA23_RS09965 | Not Available | Negative | 2090493 - 2091332 | 29502.1 |
| 5-deoxy-glucuronate isomerase | RCA23_RS09970 | Not Available | Negative | 2091329 - 2092171 | 31071.7 |
| 5-dehydro-2-deoxygluconokinase | RCA23_RS09975 | Not Available | Negative | 2092175 - 2093164 | 34100.5 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | RCA23_RS09980 | Not Available | Negative | 2093167 - 2095038 | 67272.9 |
| urate hydroxylase puud | RCA23_RS09985 | Not Available | Negative | 2095143 - 2096366 | 45689.7 |
| hydroxyisourate hydrolase | RCA23_RS09990 | Not Available | Negative | 2096378 - 2096731 | 12726.0 |
| allantoinase puue | RCA23_RS09995 | Not Available | Positive | 2096806 - 2098206 | 51930.1 |
| bifunctional allantoicase/(s)-ureidoglycine aminohydrolase | RCA23_RS10000 | Not Available | Negative | 2098337 - 2099161 | 30835.9 |
| sarcosine oxidase subunit beta family protein | RCA23_RS10005 | Not Available | Positive | 2099358 - 2100608 | 45342.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
