Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pitrilysin family protein | RCA23_RS09910 | Not Available | Negative | 2078108 - 2079370 | 45694.4 |
| threonine synthase | RCA23_RS09915 | Not Available | Negative | 2079367 - 2080752 | 50125.0 |
| surf1 family protein | RCA23_RS09920 | Not Available | Negative | 2080763 - 2081473 | 26183.8 |
| cytochrome c oxidase subunit 3 | RCA23_RS09925 | Not Available | Negative | 2081525 - 2082328 | 30580.3 |
| cytochrome c oxidase assembly protein | RCA23_RS09930 | Not Available | Negative | 2082347 - 2082916 | 21380.5 |
| hypothetical protein | RCA23_RS09935 | Not Available | Negative | 2082913 - 2083101 | 6871.35 |
| heme o synthase | RCA23_RS09940 | Not Available | Negative | 2083098 - 2084033 | 33761.7 |
| cytochrome c oxidase subunit ii | RCA23_RS09945 | Not Available | Negative | 2084056 - 2084904 | 31050.3 |
| metalloprotease tldd | RCA23_RS09950 | Not Available | Positive | 2085093 - 2086514 | 49988.5 |
| dna-processing protein dpra | RCA23_RS09955 | Not Available | Positive | 2086603 - 2087799 | 42855.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
