Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | RCA23_RS09670 | Not Available | Negative | 2029185 - 2030426 | 45096.3 |
| abc transporter permease | RCA23_RS09675 | Not Available | Negative | 2030432 - 2031682 | 46408.8 |
| extracellular solute-binding protein | RCA23_RS09680 | Not Available | Negative | 2031745 - 2032836 | 38807.1 |
| abc transporter atp-binding protein | RCA23_RS09685 | Not Available | Negative | 2032913 - 2034010 | 40843.4 |
| hypothetical protein | RCA23_RS16545 | Not Available | Positive | 2034229 - 2034384 | 5759.77 |
| flavin reductase family protein | RCA23_RS09690 | Not Available | Positive | 2034377 - 2034865 | 16881.0 |
| duf268 domain-containing protein | RCA23_RS09695 | Not Available | Positive | 2034990 - 2035700 | 27306.4 |
| yebc/pmpr family dna-binding transcriptional regulator | RCA23_RS09700 | Not Available | Negative | 2035859 - 2036599 | 26823.4 |
| slc13 family permease | RCA23_RS09705 | Not Available | Negative | 2036810 - 2038600 | 63715.7 |
| dmt family transporter | RCA23_RS09710 | Not Available | Negative | 2038578 - 2039486 | 32559.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
