Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sumf1/egtb/pvdo family nonheme iron enzyme | RCA23_RS09620 | Not Available | Positive | 2019003 - 2019956 | 33915.7 |
| tetratricopeptide repeat protein | RCA23_RS09625 | Not Available | Negative | 2019980 - 2021104 | 40587.2 |
| urea carboxylase-associated family protein | RCA23_RS09630 | Not Available | Negative | 2021257 - 2022102 | 30850.2 |
| pyridoxal-phosphate dependent enzyme | RCA23_RS09635 | Not Available | Positive | 2022221 - 2023267 | 35654.3 |
| m24 family metallopeptidase | RCA23_RS09640 | Not Available | Positive | 2023267 - 2024406 | 41133.1 |
| asp/glu racemase | RCA23_RS09645 | Not Available | Positive | 2024408 - 2025154 | 26450.0 |
| alpha/beta fold hydrolase | RCA23_RS09650 | Not Available | Negative | 2025172 - 2026017 | 30734.1 |
| amino acid synthesis family protein | RCA23_RS09655 | Not Available | Negative | 2025953 - 2026549 | 21478.9 |
| llm class flavin-dependent oxidoreductase | RCA23_RS09660 | Not Available | Negative | 2026561 - 2027595 | 38728.2 |
| aldehyde dehydrogenase | RCA23_RS09665 | Not Available | Negative | 2027600 - 2029075 | 52223.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
