Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent oxidoreductase | RCA23_RS09520 | Not Available | Negative | 1994423 - 1995454 | 36651.1 |
| ybfb/yjij family mfs transporter | RCA23_RS09525 | Not Available | Positive | 1995646 - 1996863 | 42474.9 |
| l-iditol 2-dehydrogenase | RCA23_RS09530 | Not Available | Positive | 1996989 - 1997762 | 26729.0 |
| fad-dependent monooxygenase | RCA23_RS09535 | Not Available | Positive | 1997842 - 1999044 | 43478.9 |
| ytoq family protein | RCA23_RS09540 | Not Available | Negative | 1999212 - 1999661 | 16360.5 |
| duf4147 domain-containing protein | RCA23_RS09545 | Not Available | Negative | 1999702 - 2000931 | 41894.5 |
| carboxymuconolactone decarboxylase family protein | RCA23_RS09550 | Not Available | Positive | 2001093 - 2001482 | 14357.3 |
| nadph-dependent 2,4-dienoyl-coa reductase | RCA23_RS09555 | Not Available | Positive | 2001563 - 2003575 | 71347.1 |
| thiamine pyrophosphate-dependent enzyme | RCA23_RS09560 | Not Available | Negative | 2003572 - 2005239 | 59344.1 |
| nad-dependent epimerase/dehydratase family protein | RCA23_RS16015 | Not Available | Negative | 2005394 - 2006314 | 33702.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
