Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter permease subunit | RCA23_RS09425 | Not Available | Positive | 1972268 - 1975867 | 129512.0 |
| abcb family abc transporter atp-binding protein/permease | RCA23_RS09430 | Not Available | Negative | 1975885 - 1977696 | 66128.5 |
| lysm peptidoglycan-binding domain-containing protein | RCA23_RS16780 | Not Available | Negative | 1977742 - 1979340 | 55297.0 |
| tigr00730 family rossman fold protein | RCA23_RS09440 | Not Available | Positive | 1979457 - 1979981 | 18766.6 |
| eama family transporter rard | RCA23_RS09445 | Not Available | Negative | 1979921 - 1980799 | 32195.8 |
| superoxide dismutase | RCA23_RS09450 | Not Available | Negative | 1980901 - 1981500 | 21791.3 |
| sarcosine oxidase subunit gamma | RCA23_RS09455 | Not Available | Negative | 1981604 - 1982152 | 19561.4 |
| sarcosine oxidase subunit alpha family protein | RCA23_RS09460 | Not Available | Negative | 1982145 - 1985156 | 108165.0 |
| sarcosine oxidase subunit delta | RCA23_RS09465 | Not Available | Negative | 1985224 - 1985553 | 12119.3 |
| sarcosine oxidase subunit beta family protein | RCA23_RS09470 | Not Available | Negative | 1985618 - 1986862 | 44739.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
