Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitroreductase | RCA23_RS00895 | Not Available | Negative | 196795 - 197361 | 20213.2 |
| class ii histone deacetylase | RCA23_RS00900 | Not Available | Negative | 197412 - 198509 | 39299.6 |
| hypothetical protein | RCA23_RS00905 | Not Available | Negative | 198527 - 198760 | 8709.33 |
| m48 family metallopeptidase | RCA23_RS00910 | Not Available | Positive | 198898 - 199593 | 25052.9 |
| yjbh domain-containing protein | RCA23_RS00915 | Not Available | Positive | 199634 - 199987 | 12804.4 |
| 30s ribosomal protein s12 methylthiotransferase rimo | RCA23_RS00920 | Not Available | Negative | 200219 - 201592 | 50074.9 |
| hypothetical protein | RCA23_RS00925 | Not Available | Negative | 201645 - 203057 | 50168.2 |
| gcra family cell cycle regulator | RCA23_RS00930 | Not Available | Negative | 203125 - 203694 | 20296.6 |
| abc transporter permease | RCA23_RS00935 | Not Available | Positive | 203799 - 204602 | 28936.3 |
| aspartate aminotransferase family protein | RCA23_RS00940 | Not Available | Positive | 204812 - 205990 | 40995.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
