Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| p-ii family nitrogen regulator | RCA23_RS09275 | Not Available | Positive | 1944635 - 1944973 | 12236.9 |
| type i glutamate--ammonia ligase | RCA23_RS09280 | Not Available | Positive | 1945000 - 1946403 | 51817.2 |
| heme-dependent oxidative n-demethylase subunit alpha family protein | RCA23_RS09285 | Not Available | Negative | 1946483 - 1947217 | 27721.3 |
| dimethylsulfonioproprionate lyase dddp | RCA23_RS09290 | Not Available | Positive | 1947319 - 1948665 | 50139.5 |
| biotin transporter bioy | RCA23_RS09295 | Not Available | Negative | 1948739 - 1949338 | 20690.5 |
| duf6314 family protein | RCA23_RS09300 | Not Available | Negative | 1949370 - 1949849 | 18590.4 |
| adenylosuccinate lyase | RCA23_RS09305 | Not Available | Positive | 1949964 - 1951268 | 48212.0 |
| sh3-like domain-containing protein | RCA23_RS16860 | Not Available | Positive | 1951352 - 1951684 | 12097.3 |
| sh3-like domain-containing protein | RCA23_RS16865 | Not Available | Positive | 1951681 - 1951938 | 10022.1 |
| nitrile hydratase subunit alpha | RCA23_RS09320 | Not Available | Positive | 1951938 - 1952600 | 24497.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
