Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lptf/lptg family permease | RCA23_RS09080 | Not Available | Positive | 1907835 - 1908953 | 41281.3 |
| lps export abc transporter permease lptg | RCA23_RS09085 | Not Available | Positive | 1908950 - 1910047 | 40688.9 |
| lps assembly protein lptd | RCA23_RS09090 | Not Available | Positive | 1910048 - 1912183 | 78328.7 |
| sura n-terminal domain-containing protein | RCA23_RS09095 | Not Available | Positive | 1912196 - 1913395 | 43037.0 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | RCA23_RS09100 | Not Available | Positive | 1913489 - 1914475 | 35047.2 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | RCA23_RS09105 | Not Available | Positive | 1914465 - 1915301 | 30028.6 |
| duf4167 domain-containing protein | RCA23_RS09110 | Not Available | Negative | 1915556 - 1916158 | 22614.2 |
| peptide chain release factor n(5)-glutamine methyltransferase | RCA23_RS09115 | Not Available | Negative | 1916316 - 1917167 | 31135.3 |
| peptide chain release factor 1 | RCA23_RS09120 | Not Available | Negative | 1917164 - 1918213 | 38686.8 |
| duf1499 domain-containing protein | RCA23_RS09125 | Not Available | Negative | 1918274 - 1918660 | 14536.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
