Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| virulence factor | RCA23_RS08975 | Not Available | Positive | 1885148 - 1885453 | 11316.3 |
| methylenetetrahydrofolate reductase | RCA23_RS08980 | Not Available | Positive | 1885491 - 1886417 | 33086.4 |
| methyltetrahydrofolate cobalamin methyltransferase | RCA23_RS08985 | Not Available | Positive | 1886430 - 1887494 | 37518.3 |
| hpch/hpai aldolase/citrate lyase family protein | RCA23_RS08990 | Not Available | Negative | 1887537 - 1888307 | 27002.7 |
| glucokinase | RCA23_RS08995 | Not Available | Positive | 1888505 - 1889464 | 34239.8 |
| winged helix-turn-helix domain-containing protein | RCA23_RS09000 | Not Available | Positive | 1889451 - 1890644 | 45812.7 |
| 2fe-2s iron-sulfur cluster-binding protein | RCA23_RS09005 | Not Available | Negative | 1890659 - 1893859 | 116539.0 |
| xdhc family protein | RCA23_RS09010 | Not Available | Negative | 1893852 - 1894826 | 34216.5 |
| nad(p)-dependent oxidoreductase | RCA23_RS09015 | Not Available | Negative | 1894940 - 1895830 | 30269.6 |
| sdr family oxidoreductase | RCA23_RS09020 | Not Available | Positive | 1896292 - 1897032 | 25913.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
