Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RCA23_RS16515 | Not Available | Positive | 1814805 - 1814966 | 5443.13 |
| vwa domain-containing protein | RCA23_RS08635 | Not Available | Positive | 1814970 - 1816151 | 45460.0 |
| m48 family metallopeptidase | RCA23_RS08640 | Not Available | Positive | 1816264 - 1816953 | 24677.1 |
| putative toxin-antitoxin system toxin component, pin family | RCA23_RS08645 | Not Available | Negative | 1816948 - 1817481 | 20228.6 |
| rsp_2647 family rna methyltransferase | RCA23_RS08650 | Not Available | Negative | 1817481 - 1818677 | 42896.4 |
| phosphogluconate dehydratase | RCA23_RS08655 | Not Available | Positive | 1818800 - 1820605 | 63216.9 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | RCA23_RS08660 | Not Available | Positive | 1820616 - 1821248 | 21491.1 |
| hypothetical protein | RCA23_RS08665 | Not Available | Negative | 1821208 - 1821507 | 10777.9 |
| duf294 nucleotidyltransferase-like domain-containing protein | RCA23_RS08670 | Not Available | Negative | 1821497 - 1824250 | 100288.0 |
| ybak/ebsc family protein | RCA23_RS08675 | Not Available | Positive | 1824296 - 1824769 | 16570.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
