Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobyrinate a,c-diamide synthase | RCA23_RS08495 | Not Available | Positive | 1788113 - 1789378 | 44587.7 |
| mfs transporter | RCA23_RS08500 | Not Available | Positive | 1789397 - 1790620 | 42563.2 |
| squalene/phytoene synthase family protein | RCA23_RS08505 | Not Available | Negative | 1790629 - 1791369 | 27165.4 |
| cysteine--trna ligase | RCA23_RS08510 | Not Available | Negative | 1791366 - 1792730 | 49919.4 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | RCA23_RS08515 | Not Available | Positive | 1792921 - 1794108 | 42808.1 |
| trimethylamine methyltransferase family protein | RCA23_RS08520 | Not Available | Positive | 1794310 - 1795845 | 55085.3 |
| abc-f family atp-binding cassette domain-containing protein | RCA23_RS08525 | Not Available | Negative | 1795869 - 1797683 | 66383.3 |
| gnat family n-acyltransferase | RCA23_RS08530 | Not Available | Negative | 1797715 - 1798323 | 22381.7 |
| peptide-methionine (r)-s-oxide reductase msrb | RCA23_RS08535 | Not Available | Positive | 1798563 - 1798961 | 14542.9 |
| outer membrane protein assembly factor bame | RCA23_RS08540 | Not Available | Negative | 1798958 - 1799407 | 16272.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
