Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family oxidoreductase | RCA23_RS08345 | Not Available | Positive | 1757807 - 1758907 | 39628.1 |
| tim barrel protein | RCA23_RS08350 | Not Available | Positive | 1758924 - 1759811 | 32549.2 |
| gfo/idh/moca family protein | RCA23_RS08355 | Not Available | Positive | 1759823 - 1760977 | 41772.7 |
| laci family dna-binding transcriptional regulator | RCA23_RS08360 | Not Available | Negative | 1760999 - 1762000 | 35383.4 |
| hypothetical protein | RCA23_RS08365 | Not Available | Negative | 1762014 - 1762217 | 7593.2 |
| atp-binding cassette domain-containing protein | RCA23_RS08370 | Not Available | Negative | 1762214 - 1762996 | 28740.4 |
| abc transporter permease | RCA23_RS08375 | Not Available | Negative | 1763012 - 1764085 | 38262.9 |
| substrate-binding domain-containing protein | RCA23_RS08380 | Not Available | Negative | 1764175 - 1765113 | 33126.0 |
| gh1 family beta-glucosidase | RCA23_RS08390 | Not Available | Negative | 1765405 - 1766724 | 49316.1 |
| abc transporter atp-binding protein | RCA23_RS08395 | Not Available | Negative | 1766721 - 1767779 | 38184.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
