Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guanylate kinase | RCA23_RS08200 | Not Available | Negative | 1724951 - 1725607 | 24774.4 |
| yicc/yloc family endoribonuclease | RCA23_RS08205 | Not Available | Negative | 1725597 - 1726478 | 31880.3 |
| pas domain-containing protein | RCA23_RS08210 | Not Available | Positive | 1726645 - 1727271 | 23176.2 |
| class ii 3-deoxy-7-phosphoheptulonate synthase | RCA23_RS08215 | Not Available | Negative | 1727291 - 1728661 | 50155.3 |
| helix-turn-helix domain-containing protein | RCA23_RS08220 | Not Available | Positive | 1728833 - 1729837 | 37761.6 |
| abc transporter substrate-binding protein | RCA23_RS08225 | Not Available | Positive | 1729969 - 1731150 | 39050.8 |
| abc transporter atp-binding protein | RCA23_RS08230 | Not Available | Positive | 1731226 - 1732005 | 28309.2 |
| abc transporter atp-binding protein | RCA23_RS08235 | Not Available | Positive | 1732002 - 1732715 | 25609.1 |
| abc transporter permease subunit | RCA23_RS08240 | Not Available | Positive | 1732722 - 1733732 | 36356.6 |
| branched-chain amino acid abc transporter permease | RCA23_RS08245 | Not Available | Positive | 1733729 - 1735063 | 46966.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
