Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf502 domain-containing protein | RCA23_RS08150 | Not Available | Negative | 1716978 - 1717676 | 25925.4 |
| pseudouridine-5'-phosphate glycosidase | RCA23_RS08155 | Not Available | Negative | 1717751 - 1718674 | 32296.0 |
| pfkb family carbohydrate kinase | RCA23_RS08160 | Not Available | Negative | 1718678 - 1719571 | 30376.6 |
| cold-shock protein | RCA23_RS08165 | Not Available | Positive | 1719832 - 1720038 | 7186.38 |
| 30s ribosomal protein s2 | RCA23_RS08170 | Not Available | Positive | 1720321 - 1721112 | 28275.0 |
| translation elongation factor ts | RCA23_RS08175 | Not Available | Positive | 1721186 - 1722061 | 30123.4 |
| hint domain-containing protein | RCA23_RS08180 | Not Available | Negative | 1722168 - 1723202 | 37142.7 |
| gnat family n-acetyltransferase | RCA23_RS08185 | Not Available | Negative | 1723203 - 1723712 | 19479.2 |
| nusa n-terminal domain-containing protein | RCA23_RS08190 | Not Available | Negative | 1723705 - 1724127 | 15264.3 |
| gamma carbonic anhydrase family protein | RCA23_RS08195 | Not Available | Negative | 1724428 - 1724961 | 18614.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
