Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ysc84-related protein | RCA23_RS08100 | Not Available | Negative | 1705130 - 1705687 | 19182.7 |
| porphobilinogen synthase | RCA23_RS08105 | Not Available | Negative | 1705775 - 1706785 | 36577.9 |
| hypothetical protein | RCA23_RS15985 | Not Available | Positive | 1706883 - 1707368 | 18061.3 |
| transcription-repair coupling factor | RCA23_RS08115 | Not Available | Positive | 1707395 - 1710835 | 126323.0 |
| dsba family oxidoreductase | RCA23_RS08120 | Not Available | Negative | 1710832 - 1711473 | 23811.6 |
| class i adenylate-forming enzyme family protein | RCA23_RS08125 | Not Available | Negative | 1711470 - 1712966 | 53932.9 |
| helix-turn-helix domain-containing protein | RCA23_RS08130 | Not Available | Positive | 1713031 - 1713654 | 23064.3 |
| mip/aquaporin family protein | RCA23_RS08135 | Not Available | Negative | 1713651 - 1714355 | 24816.7 |
| abc transporter substrate-binding protein | RCA23_RS08140 | Not Available | Negative | 1714342 - 1716162 | 68133.6 |
| lyse/argo family amino acid transporter | RCA23_RS08145 | Not Available | Negative | 1716376 - 1716981 | 21600.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
