Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna dihydrouridine synthase dusb | RCA23_RS08050 | Not Available | Positive | 1690889 - 1691875 | 34941.5 |
| two-component system sensor histidine kinase ntrb | RCA23_RS08055 | Not Available | Positive | 1691872 - 1692936 | 38287.3 |
| sigma-54-dependent fis family transcriptional regulator | RCA23_RS08060 | Not Available | Positive | 1692941 - 1694299 | 49345.1 |
| sensor histidine kinase ntry-like | RCA23_RS08065 | Not Available | Positive | 1694411 - 1696633 | 82325.9 |
| sigma-54-dependent transcriptional regulator | RCA23_RS08070 | Not Available | Positive | 1696630 - 1698030 | 51666.3 |
| yjbh domain-containing protein | RCA23_RS08075 | Not Available | Positive | 1698099 - 1699484 | 50272.3 |
| trkh family potassium uptake protein | RCA23_RS08080 | Not Available | Positive | 1699547 - 1700971 | 50431.5 |
| rna chaperone hfq | RCA23_RS08085 | Not Available | Positive | 1701080 - 1701313 | 8682.57 |
| gtpase hflx | RCA23_RS08090 | Not Available | Positive | 1701319 - 1702623 | 47803.2 |
| penicillin acylase family protein | RCA23_RS08095 | Not Available | Negative | 1702583 - 1705060 | 91024.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
